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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10013110_10013577_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10013110 - 10013577
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGGAG
5'SS Class:
major
3'SS Sequence:
TGTTCCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATGAT
U12 Branch Point Sequence:
TGTTCCTCCATA
Flanking Amino Acid:
CPHPPPQQTAGLIVLAAITP
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
56.8
42.4
Major BPS
54.3
0.11
1.4
47.7
45.7
Major PPT
74.7
0.56
0.8
69.5
31.3
Minor 5ss
27.2
-2.6
3.6
36.9
47.7
Minor BPS
57
0.21
2
72.43
39.8

Associated Gene:

Gene:
FRMPD3
Ensembl Gene ID:
ENSAPLG00000022824
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024062
10009249 - 10034302
25054