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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10025284_10026825_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10025284 - 10026825
Intron Length:
1542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGGGAG
5'SS Class:
major
3'SS Sequence:
TCCGTGCGGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTCTC
U12 Branch Point Sequence:
TCTCCCTCCCTT
Flanking Amino Acid:
AGVLFSTVGLDEKQPATTLL
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
56.8
42.2
Major BPS
30.8
-1.2
4.2
66.7
39.9
Major PPT
56.8
0.15
1.1
49.5
43.9
Minor 5ss
27.6
-2.6
3.6
33.7
44.4
Minor BPS
37
-0.9
3.6
65.16
45.7

Associated Gene:

Gene:
FRMPD3
Ensembl Gene ID:
ENSAPLG00000022824
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024062
10009249 - 10034302
25054