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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10027831_10027908_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10027831 - 10027908
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACG
5'SS Class:
major
3'SS Sequence:
CTGCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
GACCCCTGAGGA
Flanking Amino Acid:
PAAFEYLYIQSRNDVIRERF
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
31.2
-2.2
3.3
39.9
45.9
Minor BPS
42.9
-0.5
1.9
48.05
41.6

Associated Gene:

Gene:
FRMPD3
Ensembl Gene ID:
ENSAPLG00000022824
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024062
10009249 - 10034302
25054