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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10028029_10028130_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10028029 - 10028130
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCCCC
5'SS Class:
major
3'SS Sequence:
GCTCTGGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCACCAA
U12 Branch Point Sequence:
GGCTCACCAACC
Flanking Amino Acid:
LLQDKQPLAHVVQRTHYHGM
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
60.6
44.5
Major BPS
47.5
-0.1
1.3
55
40.2
Major PPT
63.7
0.31
1
53.4
41.5
Minor 5ss
40.5
-1.1
3
51.7
38.1
Minor BPS
44.1
-0.4
2.1
54.76
42.3

Associated Gene:

Gene:
FRMPD3
Ensembl Gene ID:
ENSAPLG00000022824
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024062
10009249 - 10034302
25054