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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10028672_10029330_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10028672 - 10029330
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
GCTTCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCTC
U12 Branch Point Sequence:
TTCTCTCTGCCT
Flanking Amino Acid:
EQVTVGETDPDMLKKEALLL
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1
59.9
39.3
Major BPS
33.6
-1
4.2
71.3
36.7
Major PPT
77.1
0.61
0.8
70
30.9
Minor 5ss
32.2
-2
2.9
42.7
37.7
Minor BPS
42.2
-0.5
3.6
75.42
41.9

Associated Gene:

Gene:
FRMPD3
Ensembl Gene ID:
ENSAPLG00000022824
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024062
10009249 - 10034302
25054