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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10029436_10029573_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10029436 - 10029573
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAG
U12 Branch Point Sequence:
ATTTACTCAGCA
Flanking Amino Acid:
IILTVLHTHQSPKSAFISAA
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
63.2
0.33
1.5
71.6
36.4
Major PPT
82
0.72
0.8
73.1
36.6
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
53.6
0.11
2
71.71
39.8

Associated Gene:

Gene:
FRMPD3
Ensembl Gene ID:
ENSAPLG00000022824
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024062
10009249 - 10034302
25054