About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10029620_10029740_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10029620 - 10029740
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAG
U12 Branch Point Sequence:
TCCTCCTTCCCT
Flanking Amino Acid:
APRERFIELVRKAKDFIILT
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
57.3
0.18
1.6
57.1
49.4
Major PPT
76.7
0.6
0.8
72.7
32
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
44.5
-0.3
3.6
75.03
47.8

Associated Gene:

Gene:
FRMPD3
Ensembl Gene ID:
ENSAPLG00000022824
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024062
10009249 - 10034302
25054