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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10080168_10081629_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10080168 - 10081629
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCATCACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCA
Flanking Amino Acid:
SIGPVKKETCGTSEVKSENR
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.7
0.6
0.9
69.4
35.6
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
63.8
0.43
1.8
79.26
37.1

Associated Gene:

Gene:
PIH1D3
Ensembl Gene ID:
ENSAPLG00000008516
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028713
10074747 - 10084150
9404
ENSAPLT00000008848
10074747 - 10084150
9404