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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10081694_10083441_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10081694 - 10083441
Intron Length:
1748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGAAAATTAATT
Flanking Amino Acid:
GDDDDDDEQGPRCSVSAMTP
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
67.6
39.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.2
0.79
0.8
79.9
32.1
Minor 5ss
28.6
-2.5
2.7
25.4
36.3
Minor BPS
50.3
0.09
1.8
69.3
40.8

Associated Gene:

Gene:
PIH1D3
Ensembl Gene ID:
ENSAPLG00000008516
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028713
10074747 - 10084150
9404
ENSAPLT00000008848
10074747 - 10084150
9404