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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10083549_10083734_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10083549 - 10083734
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
TCTCTGCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
CTCTGCCTACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
67.4
43.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79.4
0.66
0.8
72.5
32.4
Minor 5ss
45.6
-0.5
2.9
63.7
41.8
Minor BPS
39.1
-0.9
2.3
44.58
47.2

Associated Gene:

Gene:
PIH1D3
Ensembl Gene ID:
ENSAPLG00000008516
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008848
10074747 - 10084150
9404