Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10086717_10087152_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10086717 - 10087152

Intron Length:

436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAATA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTTTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TGTTCAAGATCT

Flanking Amino Acid:

PTLPFGNKLGVTSTASTTAA

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

80.8

33.7

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

84.9

0.79

0.7

80.8

31.2

Minor 5ss

35.7

-1.6

3.3

48.3

47.4

Minor BPS

45.8

-0.2

2.2

72.57

43.3

Associated Gene:

Gene:

NUP62

Ensembl Gene ID:

ENSAPLG00000008575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045508

10083388 - 10095105

11718

ENSAPLT00000008938

10084171 - 10094737

10567