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Intron Name: Anas_platyrhynchos_platyrhynchos_10_10089623_10089760_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10089623 - 10089760

Intron Length:

138

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TATGCTTCCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTGATCTTATAT

Flanking Amino Acid:

STTAITTTTTSAPPVMTYAQ

Intron Amino Acid Position:

376

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.9

1.06

0.6

14.8

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

76.4

0.59

0.9

73.7

36.6

Minor 5ss

40.7

-1

57.8

46.8

Minor BPS

54.9

0.23

1.8

73.55

43.1

Associated Gene:

Gene:

NUP62

Ensembl Gene ID:

ENSAPLG00000008575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045508

10083388 - 10095105

11718

ENSAPLT00000008938

10084171 - 10094737

10567