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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10092225_10094674_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10092225 - 10094674
Intron Length:
2450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TAGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTCAT
U12 Branch Point Sequence:
TCAGCAAGAAGT
Flanking Amino Acid:
DSLQWIDQNSDSAC*
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.8
78.5
28.9
Major BPS
63.4
0.33
1.2
65.3
41.5
Major PPT
86.6
0.82
0.8
84.8
35.4
Minor 5ss
29.5
-2.3
3.4
40.8
45.7
Minor BPS
39.3
-0.7
2.1
55.85
45.6

Associated Gene:

Gene:
NUP62
Ensembl Gene ID:
ENSAPLG00000008575
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008938
10084171 - 10094737
10567