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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10092225_10094879_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10092225 - 10094879
Intron Length:
2655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GATTGTGGAATT
Flanking Amino Acid:
DSLQWIDQNSALLQRKVEEV
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.8
78.5
28.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
80.8
0.69
0.7
73.2
31.7
Minor 5ss
29.5
-2.3
3.4
40.8
45.7
Minor BPS
42.6
-0.4
2.3
62.33
42.1

Associated Gene:

Gene:
NUP62
Ensembl Gene ID:
ENSAPLG00000008575
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045508
10083388 - 10095105
11718