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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10096400_10096493_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10096400 - 10096493
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CTTGGGGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAA
U12 Branch Point Sequence:
GGGTCCCTAAGG
Flanking Amino Acid:
QQLDTSASIEQCKSKRRCFA
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1
59.9
39.3
Major BPS
48.8
-0
1.3
46.6
38.3
Major PPT
69.2
0.43
1.1
60.9
44.7
Minor 5ss
32.2
-2
2.9
42.7
37.7
Minor BPS
48.1
-0.2
2.1
53.77
46.5

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009202
10096054 - 10114359
18306