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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10097955_10099042_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10097955 - 10099042
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGTG
5'SS Class:
major
3'SS Sequence:
TGTTGCGGATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
TGTTGCGGATTA
Flanking Amino Acid:
HSFLRALYHQDDTRRITDEK
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
68.8
42.3
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
57
0.16
1.1
55.7
44.5
Minor 5ss
37.8
-1.4
3.1
49.2
47.1
Minor BPS
39.9
-0.7
2.4
56.59
43

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009202
10096054 - 10114359
18306