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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10100010_10100332_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10100010 - 10100332
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTCAT
U12 Branch Point Sequence:
GTCATCTCAGCC
Flanking Amino Acid:
MRGQAFITFPDIQSAQDAML
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
67.1
0.42
1.4
71.4
45.1
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
46.7
-0.2
1.8
55.9
42.2

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037997
10099862 - 10114359
14498
ENSAPLT00000009227
10099862 - 10114359
14498
ENSAPLT00000009202
10096054 - 10114359
18306