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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10101259_10101590_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10101259 - 10101590
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
CTTCCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAG
U12 Branch Point Sequence:
TCTTCCTTCCCC
Flanking Amino Acid:
GPFSAVAELLDSASEPGGTA
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65.5
42
Major BPS
46.4
-0.2
1.7
61.8
44.5
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
38.1
-1.3
3.3
52.1
44.7
Minor BPS
46.1
-0.3
3.6
73.88
43.5

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037997
10099862 - 10114359
14498
ENSAPLT00000009227
10099862 - 10114359
14498