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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10102852_10102998_F

Intron Information:

Intron Rank:
8
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
10102852 - 10102998
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
GTGTGTCTTGTAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
TTCTCCTTGACC
Flanking Amino Acid:
VPLVPFNQQNKKIIVTEDSV
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
52.2
40
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
72.4
0.5
0.9
66.2
40.8
Minor 5ss
91.5
1.4
0.9
86.1
23
Minor BPS
84.3
1.06
1
85.95
32.4

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037997
10099862 - 10114359
14498
ENSAPLT00000009227
10099862 - 10114359
14498
ENSAPLT00000009202
10096054 - 10114359
18306