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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10103147_10103591_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10103147 - 10103591
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGGC
5'SS Class:
major
3'SS Sequence:
TGGTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAT
U12 Branch Point Sequence:
TTGCCCTTATTT
Flanking Amino Acid:
GTRVLIWNIHRDKDGKPELD
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58
40.8
Major BPS
66.5
0.41
1.1
57.2
40.1
Major PPT
80
0.68
0.9
76.9
42.1
Minor 5ss
27.8
-2.5
3.7
41.2
45.5
Minor BPS
67.2
0.62
1.6
81.35
40.6

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037997
10099862 - 10114359
14498
ENSAPLT00000009227
10099862 - 10114359
14498
ENSAPLT00000009202
10096054 - 10114359
18306