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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10103746_10103912_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10103746 - 10103912
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAT
U12 Branch Point Sequence:
TCCTGTCCCATT
Flanking Amino Acid:
PAPEMEYSLRAYCSVLYLKP
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
38.1
Major BPS
54.5
0.11
1.4
66.4
42.2
Major PPT
75.4
0.57
0.7
68.7
31.7
Minor 5ss
39.1
-1.2
2.8
40.9
45.4
Minor BPS
35.7
-1
2.3
51.58
44

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009227
10099862 - 10114359
14498
ENSAPLT00000009202
10096054 - 10114359
18306
ENSAPLT00000037997
10099862 - 10114359
14498