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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10104042_10105505_F

Intron Information:

Intron Rank:
11
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
10104042 - 10105505
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TGTTTTCTCTCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
TCTTCCTTGACG
Flanking Amino Acid:
EHDLYKPRFSSERVKITFGF
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.2
-0
1.3
50.1
41.8
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
86.3
0.82
0.7
84.9
30
Minor 5ss
95.2
1.52
0.7
94.3
17.7
Minor BPS
81
0.83
1.2
78.7
38.3

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037997
10099862 - 10114359
14498
ENSAPLT00000009227
10099862 - 10114359
14498
ENSAPLT00000009202
10096054 - 10114359
18306