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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10106293_10107080_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10106293 - 10107080
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTGTCCGACTT
Flanking Amino Acid:
KQDFEESKEYQRMIFVLGQK
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
56.6
42.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
33.5
-1.9
3.2
45.1
43.5
Minor BPS
44.8
-0.3
2
68.67
42.7

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037997
10099862 - 10114359
14498
ENSAPLT00000009227
10099862 - 10114359
14498
ENSAPLT00000009202
10096054 - 10114359
18306