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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10109608_10111044_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10109608 - 10111044
Intron Length:
1437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ACTTCTCAAAGT
Flanking Amino Acid:
SLSEESVEQQVSPPASMSLP
Intron Amino Acid Position:
810

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.5
0.71
0.8
73.9
36.1
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
45.7
-0.2
2.2
66.26
44.8

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037997
10099862 - 10114359
14498
ENSAPLT00000009227
10099862 - 10114359
14498
ENSAPLT00000009202
10096054 - 10114359
18306