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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10113776_10114205_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10113776 - 10114205
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
GGTATCTGACTC
Flanking Amino Acid:
CRGPEKDDVKSLMEKLKKLR
Intron Amino Acid Position:
1188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
74.7
0.56
0.8
68.9
31.6
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
45.8
-0.3
1.7
53.21
38.2

Associated Gene:

Gene:
MORC4
Ensembl Gene ID:
ENSAPLG00000008858
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009227
10099862 - 10114359
14498
ENSAPLT00000009202
10096054 - 10114359
18306
ENSAPLT00000037997
10099862 - 10114359
14498