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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10132062_10132111_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10132062 - 10132111
Intron Length:
50

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCCAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
TCTCCGTTCAGC
Flanking Amino Acid:
LGRVFLGARNAHS
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
71.1
38.6
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
83
0.74
0.9
77.3
37
Minor 5ss
17.6
-3.7
3.7
30.5
42.7
Minor BPS
43.5
-0.5
2.6
59.23
46

Associated Gene:

Gene:
PRRG3
Ensembl Gene ID:
ENSAPLG00000009043
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009404
10132052 - 10133022
971