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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10132273_10132488_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10132273 - 10132488
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAA
U12 Branch Point Sequence:
CAGCACACAACG
Flanking Amino Acid:
KEVFENKEKTMEFWKGYTNS
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.2
37.4
Major BPS
49.3
-0
0.9
56.6
29.3
Major PPT
75.9
0.58
0.8
69.3
31.3
Minor 5ss
38.8
-1.3
2.9
50
46.2
Minor BPS
40.3
-0.8
1.9
40.75
42.5

Associated Gene:

Gene:
PRRG3
Ensembl Gene ID:
ENSAPLG00000009043
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009404
10132052 - 10133022
971