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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10136383_10136794_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10136383 - 10136794
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATTGCA
5'SS Class:
major
3'SS Sequence:
CACCTCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCCCTCTCACCT
Flanking Amino Acid:
MHIPERISLAEISDAGLRPV
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
68.2
36.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.4
0.48
0.8
65.6
29.9
Minor 5ss
33.5
-1.9
3.1
42.5
44.2
Minor BPS
48
-0
1.8
64.73
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027704
10135819 - 10142879
7061