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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10137807_10141227_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10137807 - 10141227
Intron Length:
3421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TTTTCTCCCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTGTTTGCATCT
Flanking Amino Acid:
QLALHSPRHERPQEAAPALE
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
81.5
0.71
0.7
78.1
23.8
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
41.1
-0.5
2.2
59.81
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027704
10135819 - 10142879
7061