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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10141307_10141482_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10141307 - 10141482
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ATGGCCTCACTG
Flanking Amino Acid:
TAEMAAMRKQLTRISGRLRV
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
80.3
0.68
0.8
73.8
31.3
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
45.4
-0.4
1.9
49.45
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027704
10135819 - 10142879
7061