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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10145768_10148047_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10145768 - 10148047
Intron Length:
2280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGCTTC
5'SS Class:
major
3'SS Sequence:
TCTCTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TATTCACACATT
Flanking Amino Acid:
EDEETKEKSKKKKWQIFVVD
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
66.9
40
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
81.8
0.71
0.8
72.8
37.5
Minor 5ss
48.7
-0.1
3.1
67.1
38.5
Minor BPS
41.5
-0.5
2.4
66.96
43.7

Associated Gene:

Gene:
CNGA2
Ensembl Gene ID:
ENSAPLG00000009170
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036014
10145080 - 10150769
5690
ENSAPLT00000009546
10145096 - 10150769
5674