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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10187879_10189858_F

Intron Information:

Intron Rank:
140268
Intron Class:
major
Intron Phase:
Intron Coordinates:
10187879 - 10189858
Intron Length:
1980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAA
U12 Branch Point Sequence:
CTTCTGTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
74.2
36.1
Major BPS
62.7
0.32
1.2
71
33.2
Major PPT
77.9
0.63
0.8
69.3
36.9
Minor 5ss
28.3
-2.5
2.7
32
42.1
Minor BPS
45.8
-0.3
2.2
59.18
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025451
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046373
10186955 - 10190496
3542