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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10201693_10202095_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10201693 - 10202095
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTTAACC
Flanking Amino Acid:
PRKQGGAPKQPPAGAQVMPS
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.6
0.73
0.8
76.5
30.7
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
91.5
1.28
0.7
94.26
21

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009273
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042616
10201399 - 10229302
27904