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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10202216_10202340_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10202216 - 10202340
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
GCTGTGTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
AGTTGTTTAGTG
Flanking Amino Acid:
LEHNSRKARLSPQTNLCAGS
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
40.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
67
0.38
0.9
60.4
40.4
Minor 5ss
38.3
-1.3
3.1
46.2
44.4
Minor BPS
47.3
-0.3
2
54.06
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009273
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042616
10201399 - 10229302
27904