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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10208054_10223861_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10208054 - 10223861
Intron Length:
15808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
TTCTCTTCCACA
Flanking Amino Acid:
SIGPVSVIQMEYTIDIFFAQ
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
84.1
0.77
0.7
79.7
25.9
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
54.8
0.14
2
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009273
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009709
10201399 - 10243694
42296
ENSAPLT00000042616
10201399 - 10229302
27904
ENSAPLT00000036061
10201399 - 10229302
27904