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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10223930_10224128_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10223930 - 10224128
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
ATTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
YDNKLRPDIGIKPTFIDVDI
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.7
82
29.2
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009273
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042616
10201399 - 10229302
27904
ENSAPLT00000036061
10201399 - 10229302
27904
ENSAPLT00000009709
10201399 - 10243694
42296