Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10224278_10228862_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10224278 - 10228862

Intron Length:

4585

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCACC

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTGCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAC

U12 Branch Point Sequence:

GTCACGGTGATG

Flanking Amino Acid:

LALGPALRPSRCESTEEYDY

Intron Amino Acid Position:

147

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

74.9

35.3

Major BPS

66.1

0.4

1.2

69.1

37.9

Major PPT

77.4

0.62

0.9

68.8

37.2

Minor 5ss

35.2

-1.7

2.8

43.7

Minor BPS

38.2

-1

2.5

43.28

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009273

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036061

10201399 - 10229302

27904

ENSAPLT00000042616

10201399 - 10229302

27904