About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10247671_10254038_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10247671 - 10254038
Intron Length:
6368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACAAG
5'SS Class:
major
3'SS Sequence:
CAAAAATTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TGTCTCAAAAAT
Flanking Amino Acid:
SKKTYNSVSK*
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
62.1
44.1
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
63.7
0.31
1.1
54.2
44.1
Minor 5ss
36.7
-1.5
3.2
47.3
48.3
Minor BPS
46.4
-0.1
2
68.39
41.8

Associated Gene:

Gene:
GABRA3
Ensembl Gene ID:
ENSAPLG00000010123
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039742
10247443 - 10332324
84882