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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10254252_10260610_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10254252 - 10260610
Intron Length:
6359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCACCTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTTCTTCCACC
Flanking Amino Acid:
KKVLEAQEMKKKEPVALAKK
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
65.4
0.35
0.8
57.5
33
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
61.4
0.34
2
78.34
37.6

Associated Gene:

Gene:
GABRA3
Ensembl Gene ID:
ENSAPLG00000010123
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039742
10247443 - 10332324
84882
ENSAPLT00000024246
10253890 - 10339984
86095
ENSAPLT00000010558
10253922 - 10330505
76584