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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10281324_10301410_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10281324 - 10301410
Intron Length:
20087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTTTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
YDNRLRPGLGDSVTEVKTDI
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
100
1.24
0.5
100
0
Major PPT
89.7
0.89
0.7
82.2
34.1
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
GABRA3
Ensembl Gene ID:
ENSAPLG00000010123
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039742
10247443 - 10332324
84882
ENSAPLT00000024246
10253890 - 10339984
86095
ENSAPLT00000010558
10253922 - 10330505
76584