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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10304987_10330394_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10304987 - 10330394
Intron Length:
25408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACACTGC
5'SS Class:
weak_major
3'SS Sequence:
CCTCTGTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTCTCCTTCCCC
Flanking Amino Acid:
PHPRGELSPRVVKTQWLCAE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.22
1.2
48.5
43.4
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
68.1
0.41
1
60.1
40.4
Minor 5ss
42
-0.9
3.2
50.3
46.3
Minor BPS
43
-0.5
3.7
65.58
46.5

Associated Gene:

Gene:
GABRA3
Ensembl Gene ID:
ENSAPLG00000010123
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010558
10253922 - 10330505
76584