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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10304987_10339805_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10304987 - 10339805
Intron Length:
34819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
CCTCTGTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTCTCCTTCCCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.3
44.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
68.1
0.41
1
60.1
40.4
Minor 5ss
49.3
-0
2.5
64.5
46.9
Minor BPS
43
-0.5
3.7
65.58
46.5

Associated Gene:

Gene:
GABRA3
Ensembl Gene ID:
ENSAPLG00000010123
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024246
10253890 - 10339984
86095