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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10375999_10386722_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10375999 - 10386722
Intron Length:
10724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATATCCTATTT
Flanking Amino Acid:
HPDGTVLYGLRITTTAACMM
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
80
0.75
1
78.6
31
Major PPT
82.1
0.72
0.7
79.5
26
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
48.5
-0
1.9
70.34
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010479
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043785
10349812 - 10395775
45964
ENSAPLT00000010906
10349812 - 10396274
46463