Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10392873_10395095_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10392873 - 10395095

Intron Length:

2223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGTATC

5'SS Class:

major

3'SS Sequence:

CCTCTCCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTAAC

U12 Branch Point Sequence:

CTCTCCTTACAG

Flanking Amino Acid:

YDASAARVALGVTTVLTMTT

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

1.1

76.2

39.9

Major BPS

59.3

0.23

1.3

61.4

43.2

Major PPT

82.3

0.73

0.7

75.7

26.5

Minor 5ss

38.5

-1.3

3.1

45.5

42.9

Minor BPS

55.1

0.02

1.9

60.06

47.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010479

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043785

10349812 - 10395775

45964

ENSAPLT00000010906

10349812 - 10396274

46463