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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10448867_10453048_R

Intron Information:

Intron Rank:
129480
Intron Class:
major
Intron Phase:
Intron Coordinates:
10448867 - 10453048
Intron Length:
4182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTGCTACAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATGTCCTGATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72.5
39.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72.5
0.51
1
68.1
37.4
Minor 5ss
45.1
-0.5
2.8
54.8
43.4
Minor BPS
48.4
-0.1
2
61.55
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016860
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043812
10448615 - 10467563
18949
ENSAPLT00000043167
10448615 - 10464783
16169
ENSAPLT00000027235
10448615 - 10467563
18949