About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10458966_10464683_R

Intron Information:

Intron Rank:
129484
Intron Class:
major
Intron Phase:
Intron Coordinates:
10458966 - 10464683
Intron Length:
5718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.2
37.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88.5
0.87
0.6
85
22.7
Minor 5ss
30.7
-2.2
2.5
31.8
35.8
Minor BPS
67.3
0.54
1.5
75.49
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016860
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043167
10448615 - 10464783
16169
ENSAPLT00000039250
10458402 - 10465438
7037