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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10464784_10465290_R

Intron Information:

Intron Rank:
129485
Intron Class:
major
Intron Phase:
Intron Coordinates:
10464784 - 10465290
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCACCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGTTATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.5
0.62
0.8
69.6
36.6
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
58.7
0.14
1.6
62.35
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016860
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039250
10458402 - 10465438
7037