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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10464784_10467494_R

Intron Information:

Intron Rank:
129491
Intron Class:
major
Intron Phase:
Intron Coordinates:
10464784 - 10467494
Intron Length:
2711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCACCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGTTATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.5
0.62
0.8
69.6
36.6
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
58.7
0.14
1.6
62.35
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016860
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043812
10448615 - 10467563
18949