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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10486715_10490133_R

Intron Information:

Intron Rank:
140503
Intron Class:
major
Intron Phase:
Intron Coordinates:
10486715 - 10490133
Intron Length:
3419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TATCTGTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATATATCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.7
0.69
0.9
77.5
36.5
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
50.2
0
1.8
64.47
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022967
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048515
10486618 - 10530300
43683