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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_10490277_10530141_R

Intron Information:

Intron Rank:
140499
Intron Class:
major
Intron Phase:
Intron Coordinates:
10490277 - 10530141
Intron Length:
39865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGACTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTCTCTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
79
0.72
1
69
38.9
Major PPT
80.5
0.69
0.9
74
36.3
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
81.5
1.07
1
90.84
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022967
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043158
10484715 - 10530300
45586
ENSAPLT00000035461
10473908 - 10530300
56393
ENSAPLT00000048515
10486618 - 10530300
43683